Discovery of a novel B-cell lymphoma 6 (BCL6)-corepressor interaction inhibitor by utilizing structure-based drug design

Bioorg Med Chem. 2017 Sep 1;25(17):4876-4886. doi: 10.1016/j.bmc.2017.07.037. Epub 2017 Jul 20.

Abstract

B-cell lymphoma 6 (BCL6) is a transcriptional repressor that can form complexes with corepressors via protein-protein interactions (PPIs). The complexes of BCL6 and corepressors play an important role in the formation of germinal centers (GCs), and differentiation and proliferation of lymphocytes. Therefore, BCL6-corepressor interaction inhibitors would be drug candidates for managing autoimmune diseases and cancer. Starting from high-throughput screening hits 1a and 2a, we identified a novel BCL6-corepressor interaction inhibitor 8c (cell-free enzyme-linked immunosorbent assay [ELISA] IC50=0.10µM, cell-based mammalian two-hybrid [M2H] assay IC50=0.72µM) by utilizing structure-based drug design (SBDD) based on an X-ray crystal structure of 1a bound to BCL6. Compound 8c also showed a good pharmacokinetic profile, which was acceptable for both in vitro and in vivo studies.

Keywords: B cell lymphoma 6 (BCL6); Diphenylamine; Protein–protein interaction (PPI); Structure-based drug design (SBDD).

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, N.I.H., Extramural

MeSH terms

  • Amines / chemistry
  • Amines / metabolism
  • Amines / pharmacokinetics
  • Binding Sites
  • Crystallography, X-Ray
  • Drug Design*
  • Drug Evaluation, Preclinical
  • Enzyme-Linked Immunosorbent Assay
  • HEK293 Cells
  • Half-Life
  • High-Throughput Screening Assays
  • Humans
  • Inhibitory Concentration 50
  • Molecular Dynamics Simulation
  • Protein Binding
  • Protein Interaction Maps
  • Protein Structure, Tertiary
  • Proto-Oncogene Proteins / antagonists & inhibitors*
  • Proto-Oncogene Proteins / metabolism
  • Repressor Proteins / antagonists & inhibitors*
  • Repressor Proteins / metabolism
  • Two-Hybrid System Techniques

Substances

  • Amines
  • BCOR protein, human
  • Proto-Oncogene Proteins
  • Repressor Proteins